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Embeddings type
3
Accessible chromatin
3
Gene expression
Cohort
1
HPAP
Embeddings Category
6
umap
Underlying Assay
3
10X scRNA-seq
1
10X scATAC-seq
1
10X snATAC-seq
1
Smart-seq
1
sciATAC-seq
Available data
3
h5ad
2
mtx
1
rds
File set status
6
released
Organism
4
Homo sapiens
Biosample type
6
tissue
Biosample term
4
islet of Langerhans
2
pancreas
Tissue term
6
pancreas
Organ
6
pancreas
5
musculature of body
3
heart
3
lung
2
bone element
2
connective tissue
2
epithelium
2
intestine
2
kidney
2
mouth
1
adipose tissue
1
blood
1
bodily fluid
1
bone marrow
1
eye
1
large intestine
1
liver
1
lymph node
1
mammary gland
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
thymus
1
tongue
1
trachea
1
uterus
1
vasculature
Life stage
1
adult
Date released
August, 2021
2
October, 2024
1
February, 2021
1
March, 2023
1
March, 2024
1
May, 2022
Software used
1
r
Lab
3
Kyle Gaulton, UCSD
2
Franck Mauvais-Jarvis Lab
1
AMP-T2D consortium
Project
4
AMP
2
community
RFA
4
AMP
2
community
month_released!
August, 2021
Showing 6 of 6 results
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FileSet
DSR662TAR
released
Embeddings file set
: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR867WVO
released
Embeddings file set
: Single cell RNA-seq data in human pancreatic islets for 52 donors
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR612IYX
released
Embeddings file set
: The human cell atlas of Pancreas from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP