Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Embeddings type
3
Gene expression
2
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
5
umap
Underlying Assay
3
10X scRNA-seq
2
Smart-seq
1
10X scATAC-seq
1
sciATAC-seq
Available data
4
h5ad
1
rds
File set status
5
released
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
2
islet of Langerhans
2
pancreas
1
prostate gland
Tissue term
4
pancreas
3
heart
3
lung
2
kidney
2
skeletal muscle tissue
1
bladder organ
1
blood
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
large intestine
1
leukocyte
1
liver
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
Organ
4
pancreas
1
prostate gland
Life stage
2
adult
Date released
August, 2021
2
May, 2022
1
February, 2021
1
March, 2023
1
March, 2024
Software used
1
r
Lab
3
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
August, 2021
tissue_term_name!
lymph node
Showing 5 of 5 results
table-tab-icon
matrix-icon
FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR205VNM
released
Embeddings file set
: The human cell atlas of Prostate from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR612IYX
released
Embeddings file set
: The human cell atlas of Pancreas from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP