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Software
released
Peak alignment — source
Software for aligning peaks across multiple input files to generate a unified, non-overlapping peak set, with quality control and filtering based on cross-file peak reproducibility.
Software type: aligner
Pipeline
DPL857456
active
Peak Alignment Pipeline
Assays: ATAC-seq
Software: Peak alignment
Publication
released
Identification of target genes and regulatory networks for bone mineral density GWAS loci through systematic targeting and inhibition
Mohammadjavad Kahlani, Larry Mesner, Vedavathi Madhu, et al.
bioRxiv. 2026-02-16;(Preprint)
FileSet
DSR629511
released
Annotation file set: Accessible chromatin sites for Thyroid thyroid follicular (TPO, TG, TSHR+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR756804
released
Annotation file set: Accessible chromatin sites for Thyroid thyroid follicular (TPO, TG, TSHR+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR748262
released
Annotation file set: Accessible chromatin sites for Thyroid fibroblast (COL1A1, COL1A2 positive but not contractile)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR896004
released
Annotation file set: Accessible chromatin sites for Thyroid stromal (unclear markers but still has NKAIN3, P3H2 expression)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR353309
released
Annotation file set: Accessible chromatin sites for Thyroid thyroid follicular (TPO, TG, TSHR+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR527911
released
Annotation file set: Accessible chromatin sites for Thyroid thyroid follicular (TPO, TG, TSHR+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR829752
released
Annotation file set: Accessible chromatin sites for Thymus medullary TEC (myoid) (PAX7+; high expression of TEC(myo) signature)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR118746
released
Annotation file set: Accessible chromatin sites for Thymus medullary TEC (myoid) (PAX7+; high expression of TEC(myo) signature)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR818942
released
Annotation file set: Accessible chromatin sites for Thymus endothelial cells (PECAM1+/MECOM+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR014629
released
Annotation file set: Accessible chromatin sites for Thymus cortical TEC (CDH1+; ADARB2+; SLIT-ROBO signaling; very minor AIRE+ pre-decontX; high expression of Park et al cTEC/mcTEC genes)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR054201
released
Annotation file set: Accessible chromatin sites for Thymus medullary TEC (myoid Type IIa) (MYOG/MYPN/MYOT/MYH2+ (similar to TEC(myo) in Park et al); clusters with 14)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR571981
released
Annotation file set: Accessible chromatin sites for Thymus CD8+ CD4+ thymocytes (PTPRC+; cycling (G2/M and S-assigned); clusters with 0/1; low CD8+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR632061
released
Annotation file set: Accessible chromatin sites for Thymus fibroblasts (FN1+/FLRT2+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR917464
released
Annotation file set: Accessible chromatin sites for Thymus B cells (PAX5+; high expression of Park et al B cell genes)
Lab: AMP-T2D consortium
Project: AMP

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Showing 17 of 49727 results