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Citing CMDGA
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Annotation type
2
variant allelic effects
0
gene expression
Annotation Category
2
Genetic variant effects
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
12
islet of Langerhans
11
cardiomyocytes
9
EndoC_BH1
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
8
H1-hESC
8
kidney
7
neural progenitor cell
6
subcutaneous adipose tissue
5
cardiac precursors (cardiac muscle cell)
5
cardiomyocytes (cardiac muscle cell)
5
heart
4
adipose tissue
4
bone tissue
4
right atrium auricular region
4
tibial nerve
3
body of pancreas
3
coronary artery
3
frontal cortex
3
heart left ventricle
3
hepatocyte(AFP)
3
pancreatic ductal cell
3
tibial artery
2
muscle of leg
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
ascending aorta
2
brain
2
caudate nucleus
2
cerebellum
2
cerebellum (Hemisphere)
2
heart right ventricle
2
left cardiac atrium
2
occipital lobe
2
omental fat pad
2
putamen
2
retina
2
visceral abdominal adipose tissue
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
Preadipose SGBS cell line (adipocyte)
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
adipocyte
1
adrenal gland
1
amygdala
1
anterior cingulate cortex
1
aorta
1
aortic valve
1
bladder
1
breast - mammary tissue
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cells - EBV-transformed lymphocytes
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
diencephalon
1
dorsolateral prefrontal cortex
1
endothelial cell
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
excitatory neuron
1
fallopian tube
1
gastrocnemius medialis(Muscle - Skeletal)
1
globus pallidus
1
glomerular visceral epithelial cell
1
hematopoietic multipotent progenitor cell
1
hippocampal neuron
1
hypothalamus
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
kidney - cortex
1
kidney - medulla
1
left renal cortex interstitium
1
left renal pelvis
1
left ventricle myocardium
1
liver
1
lower motor neuron
1
lung
1
medulla oblongata
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
metanephros
1
midbrain
1
middle frontal gyrus
1
minor salivary gland
1
mitral valve
1
muscle of arm
1
nucleus accumbens
1
ovary
1
pancreas
1
parietal lobe
1
pituitary
1
pons
1
prostate
1
pulmonary valve
1
purified protein and synthetic DNA oligo binding assay
1
renal cortex interstitium
1
renal pelvis
1
right cardiac atrium
1
right kidney
1
right lobe of liver
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle tissue
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
1
spleen
1
stem cell
1
stomach
1
substantia nigra
1
superior temporal gyrus
1
temporal lobe
1
testis
1
thoracic aorta
1
thyroid
1
tricuspid valve
1
uterus
1
vagina
1
whole blood
Date released
2
October, 2022
Software used
2
mpraflow
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_type!
primary cell
Showing 2 of 2 results
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Download
FileSet
DSR684XQS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under pathophysiologic endoplasmic reticulum (ER) stress conditions (thapsigargin treatment).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646GMS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under steady state (baseline, DMSO)
Lab:
AMP-T2D consortium
Project:
AMP