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Citing CMDGA
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Annotation type
91
binding sites
7
caQTL
3
variant allelic effects
0
gene expression
Annotation Category
3
Genetic variant effects
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
cell line
1
primary cell
Biosample term
2
MIN6
1
naive t cell
Date released
178
February, 2021
171
September, 2023
130
February, 2024
90
May, 2021
79
May, 2020
49
August, 2021
38
February, 2020
29
March, 2024
17
January, 2020
13
March, 2023
11
March, 2020
9
August, 2018
3
October, 2022
2
January, 2018
1
February, 2023
1
July, 2020
1
November, 2020
Software used
2
mpraflow
1
deseq2
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
organ_slims!
lymphoid tissue
Showing 3 of 3 results
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FileSet
DSR308TXA
released
Annotation file set
: Variant allelic effects annotation from MPRA to prioritize disease-associated variants for five autoimmune diseases.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR684XQS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under pathophysiologic endoplasmic reticulum (ER) stress conditions (thapsigargin treatment).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646GMS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under steady state (baseline, DMSO)
Lab:
AMP-T2D consortium
Project:
AMP