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Schema
Citing CMDGA
Clear Filters
Annotation type
643
binding sites
584
histone modifications
399
target gene predictions
327
candidate regulatory elements
191
chromatin state
163
accessible chromatin
21
gene expression
10
differential activity
10
eQTL
4
variant allelic effects
Annotation Category
4
Genetic variant effects
Annotation type Category
1
ATAC-seq
1
DNase-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
81
primary cell
47
tissue
6
in vitro differentiated cells
4
cell line
Biosample term
2
MIN6
1
EndoC_BH1
1
glomerular visceral epithelial cell
Organ
2
epithelium
1
kidney
1
pancreas
Date released
2
May, 2020
2
October, 2022
Software used
2
deltasvm
2
mpraflow
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
left kidney
Showing 4 of 4 results
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FileSet
DSR684XQS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under pathophysiologic endoplasmic reticulum (ER) stress conditions (thapsigargin treatment).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646GMS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under steady state (baseline, DMSO)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR372RJW
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney podocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP