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Annotation type
3
variant allelic effects
Annotation Category
3
Genetic variant effects
Annotation type Category
1
SNP-SELEX
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
2
MIN6
1
purified protein and synthetic DNA oligo binding assay
Date released
2
October, 2022
1
February, 2023
Software used
136
deltasvm
2
mpraflow
1
betacells_cytokines_t1d
1
deseq2
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
Showing 3 of 3 results
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FileSet
DSR684XQS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under pathophysiologic endoplasmic reticulum (ER) stress conditions (thapsigargin treatment).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646GMS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under steady state (baseline, DMSO)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR976GBT
released
Annotation file set
: High-throughput analysis of the binding of human transcription factors to common sequence variants by SNP-SELEX (in-silico assay)
Lab:
Kyle Gaulton, UCSD
Project:
T1D