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Annotation type
5
caQTL
3
variant allelic effects
Annotation Category
8
Genetic variant effects
Annotation type Category
5
snATAC-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
GRCh38
Organism
8
Homo sapiens
Biosample type
6
primary cell
2
cell line
Biosample term
2
MIN6
1
endothelial cell
1
mesenchymal stem cell
1
naive t cell
1
smooth muscle cell
1
type I muscle cell
1
type II muscle cell
Organ
2
musculature of body
1
connective tissue
1
epithelium
Date released
2579
February, 2021
1672
September, 2022
289
June, 2020
287
May, 2021
286
September, 2023
162
February, 2024
144
May, 2020
95
August, 2021
70
March, 2023
56
January, 2021
56
March, 2020
44
November, 2022
39
February, 2020
30
March, 2024
26
February, 2023
21
January, 2020
19
April, 2020
9
August, 2018
9
May, 2022
8
October, 2022
2
January, 2018
2
May, 2024
1
August, 2020
1
August, 2022
1
January, 2022
1
July, 2020
1
June, 2021
1
November, 2019
1
November, 2020
1
October, 2019
Software used
chromhmm
5
eigenmt
5
rasqual
2
mpraflow
1
deseq2
Lab
5
Stephen Parker, UMich
3
AMP-T2D consortium
Project
8
AMP
RFA
5
AMP2
3
AMP
assembly!
GRCh38
software_used.software.name!
chromhmm
Showing 8 of 8 results
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Download
FileSet
DSR308TXA
released
Annotation file set
: Variant allelic effects annotation from MPRA to prioritize disease-associated variants for five autoimmune diseases.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR684XQS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under pathophysiologic endoplasmic reticulum (ER) stress conditions (thapsigargin treatment).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646GMS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under steady state (baseline, DMSO)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR375CST
released
Annotation file set
: Chromatin site QTLs of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP