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Citing CMDGA
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Annotation type
1671
candidate regulatory elements
1329
target gene predictions
977
histone modifications
944
chromatin state
885
accessible chromatin
817
binding sites
683
gene expression
171
eQTL
167
differential activity
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
3
variant allelic effects
1
representative DNase hypersensitivity sites
Annotation Category
3
Genetic variant effects
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
cell line
1
primary cell
Biosample term
2
MIN6
1
naive t cell
Date released
3
October, 2022
Software used
deltasvm
2
mpraflow
betacells_cytokines_t1d
1
deseq2
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
January, 2021
software_used.software.name!
betacells_cytokines_t1d
deltasvm
Showing 3 of 3 results
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FileSet
DSR308TXA
released
Annotation file set
: Variant allelic effects annotation from MPRA to prioritize disease-associated variants for five autoimmune diseases.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR684XQS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under pathophysiologic endoplasmic reticulum (ER) stress conditions (thapsigargin treatment).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646GMS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under steady state (baseline, DMSO)
Lab:
AMP-T2D consortium
Project:
AMP