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Annotation type
2
variant allelic effects
Annotation Category
2
Genetic variant effects
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
2
MIN6
Date released
2
October, 2022
Software used
1264
macs
333
r
215
chromhmm
132
encode-ccres
44
abc
10
qTLtools
6
deseq2
6
samtools
2
deltasvm
2
mpraflow
2
nospecificsoft_customcode
1
chicago
1
cisgenome
1
e-range
1
hiccups
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
organ_slims!
blood
Showing 2 of 2 results
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FileSet
DSR684XQS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under pathophysiologic endoplasmic reticulum (ER) stress conditions (thapsigargin treatment).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646GMS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under steady state (baseline, DMSO)
Lab:
AMP-T2D consortium
Project:
AMP