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Annotation type
2
variant allelic effects
Annotation Category
2
Genetic variant effects
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
2
MIN6
Date released
2
October, 2022
Software used
2497
macs
2339
r
1017
chromhmm
829
encode-ccres
246
abc
132
deltasvm
121
deseq2
qTLtools
32
cicero
26
chicago
26
nospecificsoft_customcode
25
seurat
23
gtex_eqtl:V8
23
gtex_finemapping_eQTL:caveman
23
gtex_finemapping_eQTL:caviar
23
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
matrix-eQTL
13
hiccups
12
deeptools
12
umitools
10
rasqual
8
fastqtl
5
eigenmt
5
peer
4
unknown
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
mach2qtl
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
emmax
1
epacts
1
fast-lmm
1
pepatac
1
probabel
1
spp
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
software_used.software.name!
qTLtools
organ_slims!
liver
Showing 2 of 2 results
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Download
FileSet
DSR684XQS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under pathophysiologic endoplasmic reticulum (ER) stress conditions (thapsigargin treatment).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646GMS
released
Annotation file set
: Variant allelic effects annotation for MPRA of the cis-regulatory effects of SNPs associated with T2D and altered in vivo islet chromatin accessibility in MIN6 cells under steady state (baseline, DMSO)
Lab:
AMP-T2D consortium
Project:
AMP