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Citing CMDGA
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Embeddings type
Gene expression
4
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
4
umap
Underlying Assay
2
10X snATAC-seq
1
10X scATAC-seq
1
sciATAC-seq
Available data
2
h5ad
2
mtx
2
tsv
1
bed bed3
1
cloupe
1
rds
1
tbi
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
2
islet of Langerhans
1
carotid canal
1
skeletal muscle tissue
Tissue term
2
pancreas
1
carotid canal
1
skeletal muscle tissue
Organ
2
pancreas
1
bone element
1
musculature of body
Date released
2
May, 2022
1
February, 2021
1
March, 2024
Software used
1
cellranger-atac
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Project
4
AMP
RFA
4
AMP
1
ENCODE3
1
LungMap2
1
T1D
tissue_term_name!
kidney
biosample_term_name!
vasculature
embeddings_type!
Gene expression
Showing 4 of 4 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP