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Citing CMDGA
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Embeddings type
1
Accessible chromatin
1
Gene expression
Embeddings Category
2
umap
Underlying Assay
10X scATAC-seq
1
10X scRNA-seq
1
sciATAC-seq
Available data
2
h5ad
File set status
2
released
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
1
islet of Langerhans
1
pancreas
Tissue term
2
pancreas
Organ
2
pancreas
Date released
1
February, 2021
1
March, 2023
Software used
1
r
Lab
34
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Xin Sun, UCSD
1
Bing Ren, UCSD
Project
2
AMP
T1D
RFA
2
AMP
biosample_term_name!
carotid canal
embeddings_underlying_assay!
10X scATAC-seq
award.project!
T1D
Showing 2 of 2 results
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FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP