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Embeddings type
3
Accessible chromatin
Embeddings Category
3
umap
Underlying Assay
30
10X scRNA-seq
26
Smart-seq
3
10X snATAC-seq
3
10X snRNA-seq
2
sciATAC-seq
1
10X scATAC-seq
Available data
2
h5ad
1
bed bed3
1
cloupe
1
mtx
1
tbi
1
tsv
File set status
3
released
Genome assembly (visualization)
1
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
1
carotid canal
1
islet of Langerhans
1
lung
1
pancreas
1
peripheral blood mononuclear cell
skeletal muscle tissue
Tissue term
1
blood
1
carotid canal
1
lung
1
pancreas
Organ
1
blood
1
bodily fluid
1
bone element
1
lung
1
pancreas
Date released
1
August, 2021
1
May, 2022
1
September, 2021
Software used
1
cellranger-atac
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
1
AMP
1
LungMap
1
T1D
RFA
1
AMP
1
LungMap2
1
T1D
biosample_term_name!
lymph node
skeletal muscle tissue
tissue_term_name!
tongue
Showing 3 of 3 results
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FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D