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Embeddings type
1
Accessible chromatin
Embeddings Category
1
umap
Underlying Assay
1
10X snATAC-seq
Available data
1
bed bed3
1
cloupe
1
mtx
1
tbi
1
tsv
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
tissue
Biosample term
4
islet of Langerhans
4
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3
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3
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2
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2
peripheral blood mononuclear cell
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1
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1
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1
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1
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1
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1
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1
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1
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1
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Tissue term
1
carotid canal
Organ
1
bone element
Date released
1
May, 2022
Software used
1
cellranger-atac
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
biosample_term_name!
skeletal muscle tissue
organ_slims!
adipose tissue
Showing 1 of 1 results
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FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP