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Schema
Citing CMDGA
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Embeddings type
2
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
2
umap
Underlying Assay
1
10X scATAC-seq
1
10X snATAC-seq
Available data
h5ad
3
mtx
3
tsv
2
rds
1
bed bed3
1
cloupe
1
tbi
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
1
carotid canal
1
islet of Langerhans
Tissue term
1
carotid canal
1
pancreas
Organ
1
bone element
1
pancreas
Date released
1
March, 2024
1
May, 2022
Software used
1
cellranger-atac
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
biosample_term_name!
uterus
skeletal muscle tissue
files.file_type!
h5ad
Showing 2 of 2 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP