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Citing CMDGA
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Embeddings type
2
Accessible chromatin
Embeddings Category
2
umap
Underlying Assay
2
10X snATAC-seq
10X snRNA-seq
Available data
2
mtx
2
tsv
1
bed bed3
1
cloupe
1
h5ad
1
tbi
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
4
islet of Langerhans
4
pancreas
2
kidney
2
lung
peripheral blood mononuclear cell
1
bladder organ
1
blood
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
heart
1
immune system
1
large intestine
1
liver
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
prostate gland
1
skeletal muscle tissue
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
Tissue term
1
carotid canal
1
skeletal muscle tissue
Organ
1
bone element
1
musculature of body
Date released
2
May, 2022
Software used
1
cellranger-atac
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
peripheral blood mononuclear cell
embeddings_underlying_assay!
10X snRNA-seq
Showing 2 of 2 results
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FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP