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Citing CMDGA
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Embeddings type
3
Gene expression
1
Accessible chromatin
Embeddings Category
4
umap
Underlying Assay
2
10X snRNA-seq
1
10X scRNA-seq
1
10X snATAC-seq
1
Smart-seq
Available data
3
h5ad
2
mtx
2
tsv
1
bed bed3
1
cloupe
1
tbi
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
4
islet of Langerhans
4
pancreas
3
heart
2
kidney
2
peripheral blood mononuclear cell
2
skeletal muscle tissue
1
bladder organ
1
blood
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
immune system
1
large intestine
1
liver
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
0
lung
Tissue term
3
heart
lung
1
carotid canal
Organ
2
heart
1
bone element
Life stage
2
adult
Date released
2
May, 2022
1
February, 2023
1
September, 2020
Software used
1
cellranger-atac
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
tissue_term_name!
lung
Showing 4 of 4 results
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FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271MPP
released
Embeddings file set
: The human cell atlas of Heart from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP