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Citing CMDGA
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Embeddings type
3
Gene expression
1
Accessible chromatin
Embeddings Category
4
umap
Underlying Assay
3
10X scRNA-seq
2
Smart-seq
1
sciATAC-seq
Available data
4
h5ad
1
mtx
1
tsv
File set status
4
released
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
islet of Langerhans
4
pancreas
3
heart
3
lung
2
kidney
2
peripheral blood mononuclear cell
2
skeletal muscle tissue
1
bladder organ
1
blood
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
immune system
1
large intestine
1
liver
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
Tissue term
2
pancreas
1
cell
1
tissues
Organ
2
pancreas
Life stage
2
adult
Date released
2
May, 2022
1
March, 2023
1
November, 2021
Software used
1
r
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
biosample_term_name!
islet of Langerhans
Showing 4 of 4 results
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FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR612IYX
released
Embeddings file set
: The human cell atlas of Pancreas from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR622GML
released
Embeddings file set
: The human cell atlas of all cells from 24 organs of 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE