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Citing CMDGA
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Embeddings type
3
Gene expression
1
Accessible chromatin
Embeddings Category
4
umap
Underlying Assay
5
10X scRNA-seq
Smart-seq
1
10X snATAC-seq
Available data
4
h5ad
1
rds
File set status
4
released
Organism
3
Homo sapiens
Biosample type
4
tissue
2
primary cell
Biosample term
4
islet of Langerhans
3
pancreas
2
heart
2
lung
2
peripheral blood mononuclear cell
2
skeletal muscle tissue
1
carotid canal
1
immune system
1
kidney
1
tissues
Tissue term
3
pancreas
2
blood
1
kidney
Organ
3
pancreas
2
blood
2
bodily fluid
1
kidney
Life stage
1
adult
Date released
2
August, 2021
1
March, 2023
1
September, 2023
Software used
1
r
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
2
AMP
2
T1D
RFA
2
AMP
2
T1D
embeddings_underlying_assay!
Smart-seq
Showing 4 of 4 results
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FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D