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Schema
Citing CMDGA
Clear Filters
Embeddings type
3
Accessible chromatin
2
Gene expression
Cohort
1
HPAP
Embeddings Category
5
umap
Underlying Assay
1
10X scATAC-seq
1
10X scRNA-seq
1
10X snATAC-seq
1
10X snRNA-seq
1
sciATAC-seq
Available data
4
h5ad
1
rds
File set status
5
released
Organism
5
Homo sapiens
Biosample type
7
tissue
primary cell
Biosample term
2
islet of Langerhans
2
lung
1
pancreas
Tissue term
3
pancreas
2
lung
Organ
3
pancreas
2
lung
Date released
2
September, 2021
1
February, 2021
1
March, 2023
1
March, 2024
Software used
1
r
Lab
AMP-T2D consortium
3
Kyle Gaulton, UCSD
2
Xin Sun, UCSD
Bing Ren, UCSD
Project
3
AMP
2
LungMap
RFA
3
AMP
2
LungMap2
biosample_type!
primary cell
organ_slims!
eye
lab.title!
AMP-T2D consortium
Bing Ren, UCSD
Showing 5 of 5 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP