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Schema
Citing CMDGA
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Embeddings type
3
Accessible chromatin
3
Gene expression
Cohort
1
HPAP
Embeddings Category
6
umap
Underlying Assay
3
10X scRNA-seq
1
10X scATAC-seq
1
10X snATAC-seq
1
Smart-seq
1
sciATAC-seq
Available data
5
h5ad
1
rds
File set status
6
released
Organism
5
Homo sapiens
Biosample type
6
tissue
2
primary cell
Biosample term
4
islet of Langerhans
4
pancreas
2
peripheral blood mononuclear cell
Tissue term
6
pancreas
2
blood
Organ
6
pancreas
3
blood
3
bodily fluid
3
lung
3
musculature of body
2
bone element
2
intestine
2
mouth
1
adipose tissue
1
bone marrow
1
connective tissue
1
eye
1
heart
1
large intestine
1
liver
1
lymph node
1
mammary gland
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
thymus
1
tongue
1
trachea
1
uterus
1
vasculature
Life stage
1
adult
Date released
2
August, 2021
1
February, 2021
1
March, 2023
1
March, 2024
1
May, 2022
Software used
1
r
Lab
5
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
4
AMP
2
T1D
RFA
4
AMP
2
T1D
tissue_term_name!
kidney
month_released!
February, 2023
Showing 6 of 6 results
table-tab-icon
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR612IYX
released
Embeddings file set
: The human cell atlas of Pancreas from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D