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Embeddings type
Gene expression
4
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
4
umap
Underlying Assay
2
10X snATAC-seq
1
10X scATAC-seq
1
sciATAC-seq
Available data
2
h5ad
1
bed bed3
1
cloupe
1
mtx
1
rds
1
tbi
1
tsv
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
2
islet of Langerhans
1
carotid canal
1
lung
Tissue term
2
pancreas
1
carotid canal
1
lung
skeletal muscle tissue
Organ
2
pancreas
1
bone element
1
lung
Date released
1
February, 2021
1
March, 2024
1
May, 2022
November, 2021
1
September, 2021
Software used
1
cellranger-atac
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Xin Sun, UCSD
Project
3
AMP
1
LungMap
T1D
RFA
3
AMP
1
LungMap2
embeddings_type!
Gene expression
award.project!
T1D
tissue_term_name!
skeletal muscle tissue
month_released!
November, 2021
Showing 4 of 4 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP