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Citing CMDGA
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Embeddings type
2
Gene expression
1
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
3
umap
Underlying Assay
2
10X scRNA-seq
1
10X scATAC-seq
10X snATAC-seq
Available data
2
h5ad
1
rds
File set status
3
released
Organism
2
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
2
islet of Langerhans
2
pancreas
1
peripheral blood mononuclear cell
Tissue term
3
pancreas
1
blood
Organ
3
pancreas
1
blood
1
bodily fluid
Date released
1
August, 2021
February, 2021
1
March, 2023
1
March, 2024
Software used
1
r
Lab
33
AMP-T2D consortium
3
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
embeddings_underlying_assay!
10X snATAC-seq
month_released!
February, 2021
Showing 3 of 3 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D