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Citing CMDGA
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Embeddings type
4
Accessible chromatin
Embeddings Category
4
umap
Underlying Assay
31
10X scRNA-seq
27
Smart-seq
4
10X snATAC-seq
4
10X snRNA-seq
sciATAC-seq
1
10X scATAC-seq
Available data
3
h5ad
2
mtx
2
tsv
1
bed bed3
1
cloupe
1
tbi
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
1
carotid canal
1
islet of Langerhans
1
lung
1
pancreas
1
peripheral blood mononuclear cell
1
skeletal muscle tissue
Tissue term
1
blood
1
carotid canal
1
lung
1
pancreas
1
skeletal muscle tissue
Organ
1
blood
1
bodily fluid
1
bone element
1
lung
1
musculature of body
1
pancreas
Date released
2
May, 2022
1
August, 2021
1
September, 2021
Software used
1
cellranger-atac
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
2
AMP
1
LungMap
1
T1D
RFA
2
AMP
1
LungMap2
1
T1D
embeddings_underlying_assay!
sciATAC-seq
tissue_term_name!
fat pad
Showing 4 of 4 results
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FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D