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Schema
Citing CMDGA
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Embeddings type
3
Accessible chromatin
1
Gene expression
Cohort
1
HPAP
Embeddings Category
4
umap
Underlying Assay
2
sciATAC-seq
1
10X scATAC-seq
1
10X scRNA-seq
Available data
3
h5ad
1
mtx
1
rds
1
tsv
File set status
4
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
islet of Langerhans
1
pancreas
1
tissues
Tissue term
3
pancreas
1
tissues
Organ
5
pancreas
blood
2
bodily fluid
lung
Date released
1
February, 2021
1
March, 2023
1
March, 2024
1
November, 2021
Software used
1
r
Lab
AMP-T2D consortium
3
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
lab.title!
AMP-T2D consortium
organ_slims!
lung
blood
Showing 4 of 4 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP