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Citing CMDGA
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Embeddings type
6
Accessible chromatin
4
Gene expression
Embeddings Category
4
umap
Underlying Assay
2
10X scRNA-seq
2
10X snRNA-seq
Available data
4
h5ad
1
mtx
1
tsv
File set status
4
released
Organism
3
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
2
pancreas
1
heart
1
islet of Langerhans
1
peripheral blood mononuclear cell
1
skeletal muscle tissue
Tissue term
2
pancreas
1
blood
1
heart
1
skeletal muscle tissue
Organ
2
pancreas
1
blood
1
bodily fluid
1
musculature of body
Life stage
adult
Date released
1
August, 2021
1
March, 2023
1
May, 2022
1
September, 2020
Software used
1
r
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Xin Sun, UCSD
Project
3
AMP
1
T1D
RFA
3
AMP
1
T1D
lab.title!
Xin Sun, UCSD
relevant_life_stage!
adult
Showing 4 of 4 results
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FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D