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Schema
Citing CMDGA
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Embeddings type
2
Gene expression
1
Accessible chromatin
Embeddings Category
3
umap
Underlying Assay
10X scRNA-seq
28
Smart-seq
2
10X snRNA-seq
1
10X snATAC-seq
Available data
2
h5ad
2
mtx
2
tsv
1
bed bed3
1
cloupe
1
tbi
File set status
3
released
Genome assembly (visualization)
1
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
heart
1
carotid canal
Tissue term
2
heart
skeletal muscle tissue
1
carotid canal
Organ
1
bone element
1
heart
Life stage
1
adult
Date released
1
February, 2023
1
May, 2022
1
September, 2020
Software used
1
cellranger-atac
Lab
3
AMP-T2D consortium
3
Kyle Gaulton, UCSD
2
Xin Sun, UCSD
1
Bing Ren, UCSD
Project
3
AMP
RFA
3
AMP
embeddings_underlying_assay!
10X scRNA-seq
tissue_term_name!
skeletal muscle tissue
Showing 3 of 3 results
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FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP