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Citing CMDGA
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Embeddings type
5
Gene expression
1
Accessible chromatin
Embeddings Category
6
umap
Underlying Assay
3
10X snRNA-seq
2
10X scRNA-seq
1
10X snATAC-seq
Available data
6
h5ad
1
mtx
1
rds
1
tsv
File set status
6
released
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
islet of Langerhans
3
pancreas
2
heart
2
lung
2
peripheral blood mononuclear cell
1
kidney
Tissue term
2
heart
2
lung
1
kidney
1
pancreas
tissues
Organ
2
lung
1
heart
1
kidney
1
pancreas
Life stage
2
adult
Date released
May, 2022
2
September, 2021
1
February, 2023
1
March, 2023
1
September, 2020
1
September, 2023
Software used
1
r
Lab
3
AMP-T2D consortium
2
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Project
4
AMP
2
LungMap
RFA
4
AMP
2
LungMap2
month_released!
May, 2022
biosample_term_name!
islet of Langerhans
tissue_term_name!
tissues
Showing 6 of 6 results
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FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap