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Schema
Citing CMDGA
Clear Filters
Embeddings type
3
Gene expression
2
Accessible chromatin
Embeddings Category
5
umap
Underlying Assay
2
10X scRNA-seq
1
10X snATAC-seq
1
10X snRNA-seq
1
sciATAC-seq
Available data
8
h5ad
2
mtx
rds
tsv
File set status
5
released
Organism
4
Homo sapiens
Biosample type
5
tissue
2
primary cell
Biosample term
3
islet of Langerhans
3
pancreas
2
peripheral blood mononuclear cell
1
heart
Tissue term
4
pancreas
2
blood
1
heart
Organ
4
pancreas
2
blood
2
bodily fluid
lung
Date released
May, 2022
2
August, 2021
1
February, 2021
1
March, 2023
1
September, 2020
Software used
1
r
Lab
4
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
3
AMP
2
T1D
RFA
3
AMP
2
T1D
month_released!
May, 2022
organ_slims!
lung
files.file_type!
rds
tsv
Showing 5 of 5 results
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FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D