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Citing CMDGA
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Embeddings type
2
Gene expression
1
Accessible chromatin
Embeddings Category
3
umap
Underlying Assay
2
10X scRNA-seq
1
10X snATAC-seq
Available data
3
h5ad
File set status
3
released
Organism
2
Homo sapiens
Biosample type
3
tissue
2
primary cell
Biosample term
4
islet of Langerhans
3
pancreas
2
heart
2
lung
2
peripheral blood mononuclear cell
1
kidney
1
tissues
Tissue term
3
pancreas
2
blood
Organ
3
pancreas
2
blood
2
bodily fluid
Date released
2
August, 2021
1
March, 2023
May, 2022
Software used
1
r
Lab
3
Kyle Gaulton, UCSD
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP
organ_slims!
adipose tissue
month_released!
May, 2022
Showing 3 of 3 results
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FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D