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Embeddings type
2
Accessible chromatin
2
Gene expression
Embeddings Category
2
umap
Underlying Assay
2
10X snATAC-seq
Available data
1
bed bed3
1
cloupe
1
h5ad
1
mtx
1
tbi
1
tsv
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
3
islet of Langerhans
1
carotid canal
1
lung
1
pancreas
1
peripheral blood mononuclear cell
1
skeletal muscle tissue
1
tissues
Tissue term
1
carotid canal
1
lung
Organ
1
bone element
1
lung
Date released
1
May, 2022
1
September, 2021
Software used
1
cellranger-atac
Lab
1
AMP-T2D consortium
1
Xin Sun, UCSD
Project
1
AMP
1
LungMap
RFA
1
AMP
1
LungMap2
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liver
Showing 2 of 2 results
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FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap