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Schema
Citing CMDGA
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Embeddings type
4
Gene expression
1
Accessible chromatin
Embeddings Category
4
umap
Underlying Assay
4
10X scRNA-seq
2
Smart-seq
Available data
4
h5ad
File set status
4
released
Organism
3
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
3
heart
3
pancreas
2
kidney
2
lung
1
bladder organ
1
blood
1
bone marrow
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
immune system
1
islet of Langerhans
1
large intestine
1
liver
1
major salivary gland
1
mammary gland
1
muscle organ
1
peripheral blood mononuclear cell
1
prostate gland
1
skeletal muscle tissue
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tongue
1
trachea
1
uterus
1
vasculature
Tissue term
3
pancreas
1
blood
1
fat pad
Organ
3
pancreas
1
adipose tissue
1
blood
1
bodily fluid
1
connective tissue
Life stage
2
adult
Date released
2
May, 2022
1
August, 2021
1
March, 2023
Software used
1
r
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Project
3
AMP
1
T1D
RFA
3
AMP
1
T1D
organ_slims!
lymph node
Showing 4 of 4 results
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FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR612IYX
released
Embeddings file set
: The human cell atlas of Pancreas from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR461STO
released
Embeddings file set
: The human cell atlas of Fat from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D