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Schema
Citing CMDGA
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Embeddings type
2
Accessible chromatin
1
Gene expression
Embeddings Category
3
umap
Underlying Assay
3
10X scRNA-seq
2
10X snATAC-seq
Smart-seq
Available data
2
h5ad
1
bed bed3
1
cloupe
1
mtx
1
tbi
1
tsv
File set status
3
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
3
tissue
2
primary cell
Biosample term
2
islet of Langerhans
2
pancreas
2
peripheral blood mononuclear cell
1
carotid canal
Tissue term
2
blood
2
pancreas
1
carotid canal
Organ
5
pancreas
2
blood
2
bodily fluid
2
lung
2
musculature of body
1
bone element
1
heart
1
kidney
0
bone marrow
Date released
2
August, 2021
1
May, 2022
Software used
1
cellranger-atac
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP
embeddings_underlying_assay!
Smart-seq
Showing 3 of 3 results
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FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D