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Embeddings type
5
Gene expression
Embeddings Category
5
umap
Underlying Assay
5
10X scRNA-seq
3
Smart-seq
2
10X snATAC-seq
1
10X scATAC-seq
1
10X snRNA-seq
1
sciATAC-seq
Available data
5
h5ad
File set status
5
released
Organism
4
Homo sapiens
Biosample type
5
tissue
1
primary cell
Biosample term
3
pancreas
1
eye
1
islet of Langerhans
1
muscle organ
1
peripheral blood mononuclear cell
Tissue term
3
pancreas
1
blood
1
eye
1
muscle organ
Organ
3
pancreas
2
blood
2
bodily fluid
2
connective tissue
2
epithelium
2
intestine
2
kidney
2
mouth
1
adipose tissue
1
bone element
1
bone marrow
1
eye
1
heart
1
large intestine
1
liver
1
lung
1
lymph node
1
mammary gland
1
musculature of body
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
thymus
1
tongue
1
trachea
1
uterus
1
vasculature
Life stage
3
adult
Date released
3
May, 2022
1
August, 2021
1
March, 2023
Software used
1
r
Lab
3
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Project
4
AMP
1
T1D
RFA
4
AMP
1
T1D
Showing 5 of 5 results
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FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR612IYX
released
Embeddings file set
: The human cell atlas of Pancreas from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR451YDC
released
Embeddings file set
: The human cell atlas of Muscle from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR877ZIP
released
Embeddings file set
: The human cell atlas of Eye from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D