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Citing CMDGA
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Embeddings type
3
Gene expression
2
Accessible chromatin
Embeddings Category
5
umap
Underlying Assay
2
10X snRNA-seq
1
10X scRNA-seq
1
10X snATAC-seq
1
sciATAC-seq
Available data
5
h5ad
1
mtx
1
tsv
File set status
5
released
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
islet of Langerhans
3
pancreas
2
lung
2
peripheral blood mononuclear cell
1
heart
1
tissues
Tissue term
2
lung
1
heart
1
pancreas
1
tissues
Organ
2
lung
1
pancreas
Life stage
adult
Date released
May, 2022
2
September, 2021
1
March, 2023
1
November, 2021
1
September, 2020
Software used
1
r
Lab
2
Xin Sun, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
2
AMP
2
LungMap
1
ENCODE
RFA
2
AMP
2
LungMap2
1
ENCODE3
relevant_life_stage!
adult
biosample_term_name!
islet of Langerhans
month_released!
May, 2022
Showing 5 of 5 results
table-tab-icon
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FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap