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Schema
Citing CMDGA
Clear Filters
Embeddings type
2
Accessible chromatin
2
Gene expression
Embeddings Category
4
umap
Underlying Assay
2
10X snATAC-seq
2
10X snRNA-seq
Available data
3
h5ad
3
mtx
3
tsv
1
bed bed3
1
cloupe
1
tbi
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
2
skeletal muscle tissue
1
carotid canal
1
heart
tissues
Tissue term
lung
2
skeletal muscle tissue
1
carotid canal
1
heart
Organ
pancreas
2
blood
2
bodily fluid
2
musculature of body
1
bone element
Life stage
adult
Date released
3
May, 2022
1
September, 2020
Software used
1
cellranger-atac
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
tissue_term_name!
lung
relevant_life_stage!
adult
biosample_term_name!
tissues
organ_slims!
pancreas
Showing 4 of 4 results
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FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP