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Schema
Citing CMDGA
Clear Filters
Embeddings type
2
Accessible chromatin
2
Gene expression
Cohort
1
HPAP
Embeddings Category
4
umap
Underlying Assay
1
10X scATAC-seq
1
10X scRNA-seq
1
10X snRNA-seq
1
sciATAC-seq
Available data
6
h5ad
4
mtx
tsv
1
bed bed3
1
cloupe
1
rds
1
tbi
File set status
4
released
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
4
islet of Langerhans
3
pancreas
peripheral blood mononuclear cell
1
heart
Tissue term
3
pancreas
lung
1
heart
Organ
3
pancreas
Life stage
adult
Date released
1
February, 2021
1
March, 2023
1
March, 2024
1
September, 2020
Software used
1
r
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
tissue_term_name!
lung
relevant_life_stage!
adult
files.file_type!
tsv
biosample_term_name!
peripheral blood mononuclear cell
Showing 4 of 4 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP