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Schema
Citing CMDGA
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Embeddings type
2
Accessible chromatin
1
Gene expression
Embeddings Category
3
umap
Underlying Assay
2
10X snATAC-seq
1
10X scRNA-seq
1
10X snRNA-seq
Smart-seq
Available data
2
h5ad
1
bed bed3
1
cloupe
1
mtx
1
tbi
1
tsv
File set status
3
released
Genome assembly (visualization)
1
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
lung
1
carotid canal
Tissue term
5
pancreas
2
blood
2
heart
2
lung
2
skeletal muscle tissue
1
carotid canal
1
kidney
1
leukocyte
1
tissues
Organ
2
lung
1
bone element
Date released
2
September, 2021
1
May, 2022
Software used
1
cellranger-atac
Lab
2
Xin Sun, UCSD
1
AMP-T2D consortium
Project
2
LungMap
1
AMP
RFA
2
LungMap2
1
AMP
tissue_term_name!
spleen
embeddings_underlying_assay!
Smart-seq
Showing 3 of 3 results
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FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap