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Schema
Citing CMDGA
Clear Filters
Embeddings type
3
Gene expression
2
Accessible chromatin
Embeddings Category
5
umap
Underlying Assay
2
10X snATAC-seq
2
10X snRNA-seq
1
10X scRNA-seq
Available data
33
h5ad
4
mtx
4
tsv
1
bed bed3
1
cloupe
1
rds
1
tbi
File set status
5
released
Genome assembly (visualization)
1
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
2
skeletal muscle tissue
1
carotid canal
1
heart
1
kidney
Tissue term
2
skeletal muscle tissue
1
carotid canal
1
heart
1
kidney
Organ
2
musculature of body
1
bone element
1
heart
1
kidney
Life stage
2
adult
Date released
3
May, 2022
1
February, 2023
1
September, 2023
Software used
1
cellranger-atac
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
5
AMP
RFA
5
AMP
tissue_term_name!
uterus
Showing 5 of 5 results
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FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP