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Assay category
4
Transcription
Assay
472
total RNA-seq
142
ChIP-seq
22
ATAC-seq
8
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Organ
93
heart
69
epithelium
69
pancreas
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Life stage
4
adult
Available data
4
bam
4
bigWig
4
tsv
3
fastq
Platform
2
Illumina HiSeq 2000
1
Illumina NextSeq 500
Run type
3
single-ended
Read length (nt)
2
43
1
75
Library insert size (nt)
2
>100
2
>200
Library made from
4
RNA
Date released
2
April, 2018
2
July, 2018
Lab
4
AMP-T2D consortium
Replication type
4
anisogenic
assay_title!
CRISPR genome editing followed by sgRNA sequencing
audit.ERROR.category!
inconsistent ontology term
Showing 4 of 4 results
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Experiment
TSTSR692699
released
single cell RNA-seq
of pancreatic stellate cell
Homo sapiens
pancreatic stellate cell female adult (37 years) and female adult (55 years) and male adult (52 years) and male adult (57 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR505983
released
single cell RNA-seq
of pancreatic stellate cell
Homo sapiens
pancreatic stellate cell female adult (48 years) and male adult (22 years) and male adult (23 years) and male adult (25 years) and male adult (27 years) and male adult (43 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR537841
released
single cell RNA-seq
of pancreatic stellate cell
Homo sapiens
pancreatic stellate cell female adult (42 years) and female adult (55 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR663505
released
single cell RNA-seq
of pancreatic stellate cell
Homo sapiens
pancreatic stellate cell female adult (56 years) and male adult (22 years)
Lab:
AMP-T2D consortium
Project:
AMP