Showing 23 of 23 results

• Pipeline

  DPL255HPT

  active

  scRNA-seq clustering for HPAP dataset

• Pipeline

  DPL066WNI

  active

  Pseudo-bulk gene expression and differential activity (Elgamal et al.)

  Assays: single cell isolation followed by RNA-seq

• Pipeline

  DPL126DIZ

  active

  Pipeline holder for unknown or undefined pipeline

• Pipeline

  DPL005RCG

  active

  A short overview of the main analysis steps for eQTL Catalogue

  Assays: RNA-seq, whole genome sequencing assay

  Software:

• Pipeline

  DPL608JFY

  active

  TF ChIP-seq Pipeline 2 (ENCODE unreplicated)

  Assays: ChIP-seq, Mint-ChIP-seq

  Software:

• Pipeline

  DPL935TZE

  active

  TF ChIP-seq Pipeline 2 (ENCODE replicated)

  Assays: ChIP-seq, Mint-ChIP-seq

  Software:

• Pipeline

  DPL961ZQY

  active

  ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953

  Assays: ATAC-seq

  Software:

• Pipeline

  DPL172PKH

  active

  RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953

  Assays: RNA-seq

  Software:

• Pipeline

  DPL930NXT

  active

  DNase-seq Pipeline (ENCODE)

  Assays: DNase-seq

  Software:

• Pipeline

  DPL064PJG

  active

  Histone ChIP-seq Pipeline 2 (ENCODE replicated)

  Assays: ChIP-seq, Mint-ChIP-seq

  Software:

• Pipeline

  DPL707AXE

  active

  ATAC-seq Pipeline (ENCODE replicated)

  Assays: ATAC-seq

  Software:

• Pipeline

  DPL121OYY

  active

  ATAC-seq Pipeline Gaulton Lab

  Assays: ATAC-seq

  Software:

• Pipeline

  DPL779IGH

  active

  ATAC-seq Pipeline Cebola Lab (Hepatocytes)

  Assays: ATAC-seq

  Software:

• Pipeline

  DPL741HGX

  active

  ATAC-seq Pipeline Cebola Lab

  Assays: ATAC-seq

  Software:

• Pipeline

  DPL450NWL

  active

  RNA-seq Pipeline Cebola Lab

  Assays: RNA-seq

  Software:

• Pipeline

  DPL118KGX

  active

  ChIP-seq Pipeline Ellinor Lab

  Assays: ChIP-seq

  Software:

• Pipeline

  DPL245EPK

  active

  ChIP-seq Pipeline Cebola Lab

  Assays: ChIP-seq

  Software:

• Pipeline

  DPL403RWM

  active

  ChIP-seq Pipeline (ENCODE)

  Assays: ChIP-seq

  Software:

• Pipeline

  DPL610SXT

  active

  RNA-seq Pipeline (Paired-ended, ENCODE)

  Assays: RNA-seq

  Software:

• Pipeline

  DPL610SXTsingleended

  active

  RNA-seq Pipeline (Single-ended, ENCODE)

  Assays: RNA-seq

  Software:

• Pipeline

  DPL983WYV

  active

  ChIP-Atlas Pipeline

  Assays: ChIP-seq, DNase-seq

  Software:

• Pipeline

  DPL010CNP

  active

  Activity by Contact

  Assays: ATAC-seq, ChIP-seq, DNase-seq

  Software:

• Pipeline

  DPL967MZM

  active

  ATAC-seq Pipeline (ENCODE unreplicated)

  Assays: ATAC-seq

  Software: