Showing 4 of 4 results

• Pipeline

  DPL608JFY

  active

  TF ChIP-seq Pipeline 2 (ENCODE unreplicated)

  Assays: ChIP-seq, Mint-ChIP-seq

  Software: Bowtie 2, Samtools, sambamba, Picard, cutadapt, ptools_bin, MACS2, BEDTools, Irreproducible Discovery Rate (IDR), Phantompeakqualtools, bedToBigBed

• Pipeline

  DPL935TZE

  active

  TF ChIP-seq Pipeline 2 (ENCODE replicated)

  Assays: ChIP-seq, Mint-ChIP-seq

  Software: Bowtie 2, Samtools, sambamba, Picard, cutadapt, ptools_bin, MACS2, BEDTools, Irreproducible Discovery Rate (IDR), Phantompeakqualtools, bedToBigBed

• Pipeline

  DPL707AXE

  active

  ATAC-seq Pipeline (ENCODE replicated)

  Assays: ATAC-seq

  Software: Bowtie 2, Samtools, Picard, cutadapt, sambamba, overlap_peaks.py, bedToBigBed, Irreproducible Discovery Rate (IDR), BEDTools, MACS2, Phantompeakqualtools

• Pipeline

  DPL967MZM

  active

  ATAC-seq Pipeline (ENCODE unreplicated)

  Assays: ATAC-seq

  Software: Bowtie 2, Samtools, Picard, cutadapt, sambamba, Irreproducible Discovery Rate (IDR), overlap_peaks.py, MACS2, BEDTools, bedToBigBed