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Assay
  • 1RNA-seq
Pipeline status
  • 1active
Pipeline groups
  • 1A short overview of the main analysis steps for eQTL Catalogue
  • 1RNA-seq Pipeline (Paired-ended, ENCODE)
  • 1RNA-seq Pipeline (Single-ended, ENCODE)
  • 1RNA-seq Pipeline 2 (Paired-ended, ENCODE)
  • 1RNA-seq Pipeline 2 (Single-ended, ENCODE)
  • 1RNA-seq Pipeline Cebola Lab
  • 1RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Software
  • 1Bowtie 2
  • 1Concat-fastq
  • 1Median Absolute Deviation
  • 1RNA pipelines
  • 1RSEM
  • 1STAR
  • 1Samtools
  • 1TopHat
  • 1Tophat BAM Repair
  • 1bedGraphToBigWig
  • 1lrna-align-star-pe
  • 1lrna-align-tophat-pe
  • 1lrna-index-rsem
  • 1lrna-index-star
  • 1lrna-index-tophat
  • 1lrna-mad-qc
  • 1lrna-quantification
  • 1lrna-signals
  • 1lrna-signals-stranded
Developed by
  • 1AMP-T2D consortium

Showing 1 of 1 results

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  • Pipeline

    DPL009OFN

    active

    RNA-seq Pipeline 2 (Paired-ended, ENCODE)
    Assays: RNA-seq
    Software: RNA pipelines, lrna-index-tophat, TopHat, Bowtie 2, lrna-align-tophat-pe, Concat-fastq, Tophat BAM Repair, lrna-signals, bedGraphToBigWig, STAR, lrna-signals-stranded, lrna-index-star, lrna-index-rsem, RSEM, lrna-align-star-pe, Samtools, lrna-quantification, lrna-mad-qc, Median Absolute Deviation
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