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Showing 25 of 62 results
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Thomsen SK, Ceroni A, van de Bunt M, et al.
December 2016;(65(12)):3805-3811.
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Sheridan H Littleton, Khanh B Trang, Christina M Volpe, et al.
Cell Genomics. 2024-05-08;
Data summary: Hi-C, RNA-seq, ATAC-seq, single-nucleus RNA-seq, and single-nucleus ATAC-seq data have been…Data summary: Raw and processed Hi-C data GEO: GSE241592Data summary: Raw and processed RNA-seq data GEO: GSE241050Data summary: Raw and processed ATAC-seq data GEO: GSE241591Data summary: Raw and processed single-nucleus RNA-seq data GEO: GSE241594Data summary: Raw and processed single-nucleus ATAC-seq data GEO: GSE241593;Publication
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Norbert Bittner, Chenfu Shi, Danyun Zhao, et al.
Ann Rheum Dis. 2024-03-13;:ard-2023-224945.
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Ruth M Elgamal, Parul Kudtarkar, Rebecca L Melton, et al.
Diabetes. 2023-15-08;(db230130)
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Katia K. Mattis, Nicole A. J. Krentz, Christoph Metzendorf, et al.
Diabetologia. 2023-01-12;
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Paola Benaglio, Han Zhu, Mei-Lin Okino, et al.
Cell Genomics. 2022-12-14;2(12):100214.
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Kristina M Garske, Caroline Comenho, David Z Pan, et al.
Epigenetics. 2022-12-01;17(13):1849-1862.
Available supplemental data: websiteFile format: other formatData summary: Assay for transposase accessible chromatin (ATAC) -seq libraries were produced from human primary…Publication
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Ricardo D’Oliveira Albanus, Xuming Tang, Henry J. Taylor, et al.
bioRxiv. 2022-11-14;
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Charles A Herring, Rebecca K Simmons, Saskia Freytag, et al.
Cell. 2022-10-31;185(23):4428-4447.
Available supplemental data: websiteFile format: other formatData summary: Single-nuclei RNA-seq and single-nuclei ATAC-seq data have been deposited at GEO under accession…Available supplemental data: websiteData summary: Accompanying interactive browsers for this study are available at http://brain.listerlab.org.Available supplemental data: websiteData summary: All data for the Velmeshev et al. study is publicly available through the Sequence Read Archive,…Available supplemental data: websiteData summary: All original code has been deposited at Zenodo and is publicly available as of the date of…Available supplemental data: websiteData summary: Any additional information required to reanalyze the data reported in this work paper is available…Publication
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Goutham Atla, Silvia Bonàs-Guarch, Mirabai Cuenca-Ardura, et al.
Genome Biol. 2022-09-15;23(1):196.
Available supplemental data: websiteFile format: textPublication
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Sebastian Preissl, Kyle J Gaulton, Bing Ren.
Nat Rev Genet. 2022-07-15;
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Hongbo Liu, Tomohito Doke, Dong Guo, et al.
Nature Genetics. 2022-06-16;54:950–962.
Available supplemental data: websiteData summary: Customized code used in the present study is available at githubPublication
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Steven Gazal, Omer Weissbrod, Farhad Hormozdiari, et al.
Nature Genetics. 2022-06-06;(2022)
Data summary: The list of 19,995 genes, summary statistics of the 63 independent traits, training and validation…Data summary: Links for all data sets used to create S2G strategies are provided in Supplementary Table 26.Data summary: Access to the UK Biobank resource is available via applicationData summary: The GWAS Catalog is availableData summary: Open Targets SNP–gene pairs are availableData summary: SNP–gene pairs from ref48 are availableData summary: The code to estimate precision and recall of S2G strategies and the code to create combined S2G…Data summary: The code to estimate precision and recall of S2G strategies and the code to create combined S2G…Publication
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Simon Koplev, Marcus Seldin, Katyayani Sukhavasi, et al.
Nat Cardiovasc Res. 2022-01-12;1(1):85-100.
Available supplemental data: websiteData summary: The website was developed with a Python Flask backend and a sqlite3 database, with an application…Publication
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Peter Orchard, Nandini Manickam, Christa Ventresca, et al.
Genome Res. 2021-11-23;31(12):2258-2275.
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Hannah J Perrin, Kevin W Currin, Swarooparani Vadlamudi, et al.
PLoS Genet. 2021-10-26;17(10):e1009865.
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Jian Yan, Yunjiang Qiu, André M. Ribeiro dos Santos, et al.
Nature. 2021-1-27;
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Alexandro E Trevino, Fabian Müller, Jimena Andersen, et al.
Cell. 2021-09-16;184(19):5053-5069.
Available supplemental data: websiteData summary: Data used for the analyses presented in this work are available under GEO: GSE162170 and on a…Available supplemental data: websiteData summary: BPNet code can be found at GitHub.Available supplemental data: websiteData summary: A supplementary website with references to the data, code repositories and tools for interactive…Publication
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Shubham Khetan, Susan Kales, Romy Kursawe, et al.
Nat Commun. 2021-09-02;12(1):5242.
Data summary: Linked to ZenodoPublication
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Joshua Chiou, Ryan J Geusz, Mei-Lin Okino, et al.
Nature. 2021-05-19;594(7863):398-402.
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James D Hocker, Olivier B Poirion, Fugui Zhu, et al.
Sci Adv.. 2021-05-14;7(20):eabf1444.
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Anthony Aylward, Mei-Lin Okino, Paola Benaglio, et al.
PLoS Genet. 2021-05-13;17(5):e1009531.
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Arushi Varshney, Yasuhiro Kyono, Venkateswaran Ramamoorthi Elangovan, et al.
Diabetes. 2021-04-13;(db201087)
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Joseph Nasser, Drew T. Bergman, Charles P. Fulco, et al.
Nature. 2021-04-07;593:238–243.
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Joshua Chiou, Chun Zeng, Zhang Cheng, et al.
Nat Genet. 2021-04-01;53(4):455-466.