Search – Common Metabolic Diseases Genome Atlas

Showing 19 of 19 results

Publication
released
Multimodal cell atlas of the ageing human skeletal muscle
Yiwei Lai, Ignacio Ramírez-Pardo, Joan Isern, et al.
Nature. 2024-04-22;
- PMID:38649488
- doi:10.1038/s41586-024-07348-6
Data summary: All raw data have been deposited to CNGB Nucleotide Sequence Archive (CNP0004394, CNP0004395,…
URL: https://db.cngb.org/cdcp/hlma/
Data summary: All processed data are available at the Human Muscle Ageing Cell Atlas database.
URL: https://github.com/MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software
Data summary: All data were analysed using standard programs and packages, as described in the Methods. Custom…
URL: https://github.com/123anjuan/HMA
Data summary: Analysis of the generated data82.
Publication
released
Deconstruction of rheumatoid arthritis synovium defines inflammatory subtypes
Fan Zhang, Anna Helena Jonsson, Aparna Nathan, et al.
Nature. 2023-11-08;623(7987):616-624.
URL: https://doi.org/10.7303/syn52297840
Data summary: CITE-seq single-cell expression matrices and sequencing and bulk expression matrices are available…
URL: https://arkportal.synapse.org/Explore/Datasets/DetailsPage?id=syn52297840
Data summary: Associated genotype and clinical data are available through the Arthritis and Autoimmune and…
URL: https://immunogenomics.io/ampra2/
Data summary: A cell browser website is available to visualize our data and results.
Data summary: AMP Phase 1 single-cell data from ref. 8 are available on Immport (SDY998). PEAC clinical trial…
URL: https://github.com/Immunogenomics/RA_Atlas_CITEseq/
Data summary: The source code for the analyses is available at GitHub
URL: https://zenodo.org/record/8118599
Data summary: The source code for the analyses is available at zenodo
Publication
released
Cohesin-mediated loop anchors confine the locations of human replication origins
Daniel J Emerson # 1 2 3 , Peiyao A Zhao # 4 , Ashley L Cook # 1 2 3 , et al.
Nature. 2022-06-08;606(7915):812-819.
Data summary: All new raw data created in this manuscript have been uploaded to the 4D Nucleome portal and will…
Publication
released
Systematic analysis of binding of transcription factors to noncoding variants
Jian Yan, Yunjiang Qiu, André M. Ribeiro dos Santos, et al.
Nature. 2021-1-27;
- doi:10.1038/s41586-021-03211-0
- PMID:33505025
Publication
released
Large-scale genetic association and single cell accessible chromatin mapping defines cell type-specific mechanisms of type 1 diabetes risk
Joshua Chiou, Ryan J Geusz, Mei-Lin Okino, et al.
Nature. 2021-05-19;594(7863):398-402.
- doi:10.1038/s41586-021-03552-w
- PMID:34012112
Publication
released
Genome-wide enhancer maps link risk variants to disease genes
Joseph Nasser, Drew T. Bergman, Charles P. Fulco, et al.
Nature. 2021-04-07;593:238–243.
- doi:10.1038/s41586-021-03446-x
Publication
released
Regulatory genomic circuitry of human disease loci by integrative epigenomics
Carles A Boix, Benjamin T James, Yongjin P Park, et al.
Nature. 2021-02-03;590(7845):300-307.
Publication
released
Expanded encyclopaedias of DNA elements in the human and mouse genomes
The ENCODE Project Consortium, Jill E. Moore, Michael J. Purcaro, et al.
Nature. 2020-07-29;583(7818):699–710.
Publication
released
Index and biological spectrum of human DNase I hypersensitive sites
Wouter Meuleman, Alexander Muratov, Eric Rynes, et al.
Nature. 2020-07-29;584(7820):244–251.
Publication
released
Charting cellular identity during human in vitro β-cell differentiation
Adrian Veres, Aubrey L Faust, Henry L Bushnell, et al.
Nature. 2019-05-01;569(7756):368-373.
Publication
released
Single-cell Transcriptomes Identify Human Islet Cell Signatures And Reveal Cell-type–specific Expression Changes In Type 2 Diabetes
Nathan Lawlor, Joshy George, Mohan Bolisetty, et al.
Genome Research. 2017-02-01;27(2):208-222.
- doi:10.1101/gr.212720.116
- PMID:27864352
Publication
released
Prepatterning Of Differentiation-driven Nuclear Lamin A/C-associated Chromatin Domains By GlcNAcylated Histone H2B
Torunn Rønningen, Akshay Shah, Anja R. Oldenburg, et al.
Genome Research. 2015-12;25(12):1825-1835.
- doi:10.1101/gr.193748.115
- PMID:26359231
Publication
released
Acute TNF-induced Repression Of Cell Identity Genes Is Mediated By NFκB-directed Redistribution Of Cofactors From Super-enhancers
Søren Fisker Schmidt, Bjørk Ditlev Larsen, Anne Loft, et al.
Genome Research. 2015-09;25(9):1281-1294.
- doi:10.1101/gr.188300.114
- PMID:26113076
Publication
released
Integrative analysis of haplotype-resolved epigenomes across human tissues
Danny Leung, Inkyung Jung, Nisha Rajagopal, et al.
Nature. 2015-02-19;518(7539):350-354.
Publication
released
A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes
Ida Moltke, Niels Grarup, Marit E Jørgensen, et al.
Nature. 2014-08-14;512(7513):190-3.
- doi:10.1038/nature13425
- PMID:25043022
Publication
released
Transcriptome and genome sequencing uncovers functional variation in humans
Tuuli Lappalainen, Michael Sammeth, Marc R Friedländer, et al.
Nature. 2013-09-26;501(7468):506-11.
Publication
released
Biological, clinical and population relevance of 95 loci for blood lipids
Tanya M Teslovich, Kiran Musunuru, Albert V Smith, et al.
Nature. 2010-08-05;466(7307):707-13.
URL: http://csg.sph.umich.edu/willer/public/lipids2010/
Publication
released
Genome-wide Analysis Of Histone Modifications In Human Pancreatic Islets
Reena Bhandare, Jonathan Schug, John Le Lay, et al.
Genome Research. 2010-04;20(4):428-433.
- doi:10.1101/gr.102038.109
- PMID:20181961
Publication
released
Parental origin of sequence variants associated with complex diseases
Augustine Kong, Valgerdur Steinthorsdottir, Gisli Masson, et al.
Nature. 2009-12-17;462(7275):868-74.

Publication status

Publication year

Journal

Published by

Has dataset

supplementary_data.supplementary_data_type!

publication_year!

Showing 19 of 19 results