Showing 6 of 6 results

• Pipeline

  DPL255HPT

  active

  scRNA-seq clustering for HPAP dataset

• Pipeline

  DPL066WNI

  active

  Pseudo-bulk gene expression and differential activity (Elgamal et al.)

  Assays: single cell isolation followed by RNA-seq

• Pipeline

  DPL472KCS

  active

  Annotation pipeline popularVote (popV for short) from Tabula Sapiens

  Assays: single cell isolation followed by RNA-seq

• Pipeline

  DPL126DIZ

  active

  Pipeline holder for unknown or undefined pipeline

• Pipeline

  DPL961ZQY

  active

  ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953

  Assays: ATAC-seq

  Software: Trim Galore, BWA, Samtools, Picard, MACS2

• Pipeline

  DPL930NXT

  active

  DNase-seq Pipeline (ENCODE)

  Assays: DNase-seq

  Software: hotspot2, BEDOPS, BWA, cutadapt, Samtools, Picard, Digital genomic footprinting, bedToBigBed