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Antje K Rottner, Yingying Ye, Elena Navarro-Guerrero, et al.
Nat Genet. 2022-12-21;55(1):54-65.
Available supplemental data: websiteFile format: textData summary: Pancreatic beta cell function and type 2 diabetes predicted effector genes (Rottner AK et al., 2023)Publication
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Charles A Herring, Rebecca K Simmons, Saskia Freytag, et al.
Cell. 2022-10-31;185(23):4428-4447.
Available supplemental data: websiteFile format: other formatData summary: Single-nuclei RNA-seq and single-nuclei ATAC-seq data have been deposited at GEO under accession…Available supplemental data: websiteData summary: Accompanying interactive browsers for this study are available at http://brain.listerlab.org.Available supplemental data: websiteData summary: All data for the Velmeshev et al. study is publicly available through the Sequence Read Archive,…Available supplemental data: websiteData summary: All original code has been deposited at Zenodo and is publicly available as of the date of…Available supplemental data: websiteData summary: Any additional information required to reanalyze the data reported in this work paper is available…Publication
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Ana Uzquiano, Amanda J Kedaigle, Martina Pigoni, et al.
Cell. 2022-09-29;185(20):3770-3788.e27.
Available supplemental data: websiteData summary: Read-level data from scRNA-seq, scATAC-seq, SHARE-seq, and Slide-seq data, supporting the findings…Available supplemental data: websiteData summary: The count-level data and meta-data have been deposited at the Single Cell Portal.Available supplemental data: websiteData summary: Supplemental data related to Figures 1, ,3,3, ,4,4, ,5,5, ,6,6, and and77 has been deposited…Available supplemental data: websiteData summary: Code used during data analysis is available at GitHub. d Any additional information required to…Available supplemental data: websiteData summary: Data from previous publications that was used in this study can be found at the Gene Expression…Publication
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Hongbo Liu, Tomohito Doke, Dong Guo, et al.
Nature Genetics. 2022-06-16;54:950–962.
Available supplemental data: websiteData summary: Customized code used in the present study is available at githubPublication
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Steven Gazal, Omer Weissbrod, Farhad Hormozdiari, et al.
Nature Genetics. 2022-06-06;(2022)
Data summary: The list of 19,995 genes, summary statistics of the 63 independent traits, training and validation…Data summary: Links for all data sets used to create S2G strategies are provided in Supplementary Table 26.Data summary: Access to the UK Biobank resource is available via applicationData summary: The GWAS Catalog is availableData summary: Open Targets SNP–gene pairs are availableData summary: SNP–gene pairs from ref48 are availableData summary: The code to estimate precision and recall of S2G strategies and the code to create combined S2G…Data summary: The code to estimate precision and recall of S2G strategies and the code to create combined S2G…Publication
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Kousuke Mouri, Michael H. Guo, Carl G. de Boer, et al.
Nat Genet. 2022-05-01;54(5):603-612.
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Marianna Zazhytska, Albana Kodra, Daisy A Hoagland, et al.
Cell. 2022-03-17;185(6):1052-1064.e12.
Available supplemental data: websiteData summary: Human and hamster RNAseq, scRNAseq, in situ HiC, supplemental spreadsheets and detailed…Data summary: This study did not generate custom computer code. Any additional information is available from…Publication
released
Kai Zhang, James D. Hocker, Michael Miller, et al.
Cell. 2021-11-08;S0092-8674(21):01279-4.
Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human lung samples: dbGaP: phs001961Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human heart samples: dbGaP: phs002204Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human islet samples: GEO: GSE160472Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human fetal tissues:…Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human fetal tissues:…Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human fetal tissues:…Available supplemental data: websiteFile format: other formatData summary: Human chromatin accessibility during developmentPublication
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Alexandro E Trevino, Fabian Müller, Jimena Andersen, et al.
Cell. 2021-09-16;184(19):5053-5069.
Available supplemental data: websiteData summary: Data used for the analyses presented in this work are available under GEO: GSE162170 and on a…Available supplemental data: websiteData summary: BPNet code can be found at GitHub.Available supplemental data: websiteData summary: A supplementary website with references to the data, code repositories and tools for interactive…Publication
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Adam M. H. Young, Natsuhiko Kumasaka, Fiona Calvert, et al.
Nat Genet. 2021-06-03;53(6):861-868.
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Joshua Chiou, Chun Zeng, Zhang Cheng, et al.
Nat Genet. 2021-04-01;53(4):455-466.
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Houda Belaghzal, Tyler Borrman, Andrew D Stephens, et al.
Nat Genet. 2021-02-11;53(3):367-378.
Data summary: All sequencing data have been submitted to a public data repository (GEO; accession number…Publication
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Daniel Richard, Zun Liu, Jiaxue Cao, et al.
Cell. 2020-04-16;181(2):362-381.
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M Ryan Corces, Anna Shcherbina, Soumya Kundu, et al.
Nat Genet. 2020 Oct 26;52(11):1158-1168.
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Diego Calderon, Michelle L. T. Nguyen, Anja Mezger, et al.
Nature Genetics. 2019-9-30;51:1494–1505.
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Blagoje Soskic, Eddie Cano-Gamez, Deborah J. Smyth, et al.
Nature Genetics. 2019-9-23;51:1486–1493.
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Mireia Ramos-Rodríguez, Helena Raurell-Vila, Maikel L. Colli, et al.
Nature Genetics. 2019-11-01;51:1588–1595.
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Inkyung Jung, Anthony Schmitt, Yarui Diao, et al.
Nature Genetics. 2019-09-09;51:1442–1449.
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Yanxiao Zhang, Ting Li, Sebastian Preissl, et al.
Nat Genet. 2019-08-19;51(9):1380-1388.
Available supplemental data: websiteData summary: All sequencing datasets have been deposited on GEO with the accession number GSE116862.Publication
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Irene Miguel-Escalada, Silvia Bonàs-Guarch, Inês Cebola, et al.
Nature Genetics. 2019-06-28;51:1137-1148.
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Elizabeth H Finn, Gianluca Pegoraro, Hugo B Brandão, et al.
Cell. 2019-03-07;176(6):1502-1515.e10.
Data summary: The Hi-C data has been deposited in GEO under ID code GSE107051, and in the 4D Nucleome data…Publication
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Rinki Ratnapriya, Olukayode A. Sosina, Margaret R. Starostik, et al.
Nature Genetics. 2019-02-11;51:606–610.
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Monique G P van der Wijst, Harm Brugge, Dylan H de Vries, et al.
Nature Genetics. 2018-4-2;50:493–497.
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John A. Morris, John P. Kemp, Scott E. Youlten, et al.
Nature Genetics. 2018-12-31;51(2):258-266.
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Benjamin J Schmiedel, Divya Singh, Ariel Madrigal, et al.
Cell. 2018-11-29;175(6):1701-1715.e16.