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Citing CMDGA
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Embeddings type
4
Gene expression
1
Accessible chromatin
Embeddings Category
5
umap
Underlying Assay
4
10X scRNA-seq
2
Smart-seq
1
10X snATAC-seq
Available data
4
h5ad
1
bed bed3
1
cloupe
1
mtx
1
rds
1
tbi
1
tsv
File set status
5
released
Genome assembly (visualization)
1
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
3
heart
3
lung
2
islet of Langerhans
2
kidney
2
pancreas
2
skeletal muscle tissue
1
bladder organ
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
immune system
1
large intestine
1
liver
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
Tissue term
4
pancreas
blood
2
kidney
1
carotid canal
Organ
2
kidney
2
pancreas
1
bone element
Life stage
3
adult
Date released
3
May, 2022
1
March, 2023
1
September, 2023
Software used
1
cellranger-atac
1
r
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
5
AMP
RFA
5
AMP
tissue_term_name!
blood
Showing 5 of 5 results
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FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR612IYX
released
Embeddings file set
: The human cell atlas of Pancreas from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR957UZP
released
Embeddings file set
: The human cell atlas of Kidney from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP