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Schema
Citing CMDGA
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Embeddings type
3
Gene expression
2
Accessible chromatin
Embeddings Category
5
umap
Underlying Assay
2
10X snATAC-seq
2
10X snRNA-seq
1
10X scRNA-seq
Available data
4
h5ad
3
mtx
3
tsv
1
bed bed3
1
cloupe
1
tbi
File set status
5
released
Genome assembly (visualization)
1
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
2
skeletal muscle tissue
1
carotid canal
1
heart
islet of Langerhans
1
pancreas
Tissue term
2
skeletal muscle tissue
1
carotid canal
1
heart
1
pancreas
Organ
2
musculature of body
1
bone element
1
pancreas
Life stage
adult
Date released
3
May, 2022
1
March, 2023
1
September, 2020
Software used
1
cellranger-atac
1
r
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
5
AMP
2
LungMap
1
ENCODE
RFA
5
AMP
relevant_life_stage!
adult
month_released!
February, 2021
biosample_term_name!
islet of Langerhans
Showing 5 of 5 results
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FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP